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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
0
MeRIP-seq
Assay category
198
DNA binding
2
Transcription
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
43
December, 2017
43
May, 2021
24
February, 2018
21
August, 2021
2
December, 2019
Available data
146
bam
120
fastq
115
bigWig
110
bed narrowPeak
40
tagAlign
19
bed bed3+
14
bigBed narrowPeak
2
tsv
Organism
200
Homo sapiens
Biosample type
1045
tissue
490
cell line
466
primary cell
200
in vitro differentiated cells
3
stem cell
Organ
67
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
Project
200
AMP
Genome assembly (visualization)
120
GRCh38
119
hg19
Lab
163
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
200 results
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ChIP-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
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