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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
0
MeRIP-seq
Assay category
279
DNA binding
187
Transcription
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
48
July, 2018
43
April, 2018
40
September, 2020
33
May, 2022
33
September, 2018
31
June, 2019
24
October, 2019
12
February, 2021
9
November, 2017
5
May, 2019
4
August, 2021
3
August, 2018
3
July, 2019
3
June, 2018
1
November, 2018
Available data
347
bigWig
342
bam
226
bed narrowPeak
222
fastq
100
tagAlign
100
tsv
57
bigBed narrowPeak
52
zippedFastqFolder
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
2
csv
Organism
466
Homo sapiens
Biosample type
1045
tissue
490
cell line
466
primary cell
200
in vitro differentiated cells
3
stem cell
Organ
162
epithelium
144
pancreas
23
vasculature
20
blood vessel
17
vein
16
connective tissue
15
kidney
12
brain
10
musculature of body
5
heart
4
liver
3
eye
Project
297
AMP
85
HPAP
84
T1D
Genome assembly (visualization)
347
hg19
307
GRCh38
Lab
264
AMP-T2D consortium
117
Kyle Gaulton, UCSD
85
Klaus Kaestner, Upenn
Audit category:
32
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
466 results
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ChIP-seq
single cell RNA-seq
primary cell
Langerhans cell
85
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic alpha cell
13
12
pancreatic beta cell
13
12
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