Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
263
Transcription
1
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
10
November, 2020
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
1
May, 2021
1
November, 2018
1
September, 2018
Available data
105
tsv
52
zippedFastqFolder
36
fastq
13
txt
8
csv
Organism
274
Homo sapiens
Biosample type
178
tissue
88
primary cell
6
cell line
2
in vitro differentiated cells
Organ
93
heart
64
kidney
10
pancreas
9
lung
6
blood vessel
6
epithelium
6
vasculature
2
artery
1
liver
1
musculature of body
Project
133
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
hg19
Lab
112
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
7
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
274 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
DNAme array
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
primary cell
Langerhans cell
85
pancreatic cell
2
monocyte
1
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download