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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
263
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
107
August, 2021
102
February, 2021
47
September, 2023
40
September, 2020
34
May, 2022
10
November, 2020
9
April, 2020
5
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
107
tsv
97
txt
52
zippedFastqFolder
36
fastq
8
csv
Organism
359
Homo sapiens
Biosample type
265
tissue
87
primary cell
6
cell line
2
in vitro differentiated cells
Organ
93
heart
84
bone element
66
kidney
10
pancreas
9
lung
7
epithelium
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
1
connective tissue
1
liver
1
musculature of body
Project
219
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
hg19
Lab
198
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
92
inconsistent ontology term
9
audit script error
assembly!
hg19
BIOSAMPLE
ASSAY
360 results
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single cell RNA-seq
RNA microarray
MeRIP-seq
tissue
bone element
84
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 18 more…
primary cell
Langerhans cell
85
pancreatic cell
2
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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