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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
153
Transcription
82
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
54
May, 2022
47
September, 2023
40
September, 2020
39
February, 2021
19
April, 2020
16
January, 2021
14
August, 2021
10
November, 2020
3
May, 2023
2
February, 2023
1
March, 2023
Available data
73
zippedFastqFolder
61
fastq
8
txt
Organism
243
Homo sapiens
Biosample type
141
primary cell
97
tissue
6
cell line
1
stem cell
Organ
64
kidney
20
pancreas
19
lung
8
blood
8
bodily fluid
6
epithelium
Project
133
HPAP
47
KPMP
27
AMP
19
LungMap
18
T1D
1
community
Lab
AMP-T2D consortium
133
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Anna Gloyn, Oxford
Audit category:
27
audit script error
6
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
245 results
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single cell RNA-seq
snATAC-seq
MeRIP-seq
CRISPRi RNA-seq
primary cell
Langerhans cell
85
48
peripheral blood mononuclear cell
8
tissue
kidney
58
6
lung
9
10
islet of Langerhans
6
4
pancreas
4
cell line
EndoC_BH1
6
stem cell
SB Ad3.1
1
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