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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1280
total RNA-seq
331
ATAC-seq
182
single cell RNA-seq
181
DNase-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
198
Transcription
28
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
112
August, 2021
47
September, 2023
19
April, 2020
16
July, 2019
10
November, 2020
8
January, 2021
6
April, 2018
6
February, 2021
3
December, 2019
3
February, 2023
3
May, 2023
2
May, 2022
1
August, 2022
Available data
127
tsv
22
bam
22
bigWig
14
txt
6
csv
6
fastq
1
bed bed3+
Organism
235
Homo sapiens
Biosample type
primary cell
228
tissue
6
cell line
2
in vitro differentiated cells
Organ
94
heart
71
kidney
29
pancreas
19
lung
6
blood vessel
6
epithelium
6
vasculature
4
brain
4
liver
3
musculature of body
2
adipose tissue
2
artery
2
connective tissue
Project
160
AMP
47
KPMP
19
LungMap
10
T1D
Genome assembly (visualization)
23
hg19
22
GRCh38
Lab
133
AMP-T2D consortium
47
KPMP
19
Xin Sun, UCSD
17
Katalin Susztak, Upenn
10
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
audit script error
8
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
236 results
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single cell RNA-seq
snATAC-seq
small RNA-seq
MeRIP-seq
tissue
kidney
64
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 26 more…
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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