Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1528
total RNA-seq
531
ATAC-seq
360
single cell RNA-seq
212
DNase-seq
85
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
360
Transcription
84
DNA accessibility
Target of assay
8
control
5
nucleotide modification
Date released
112
August, 2021
56
May, 2022
48
July, 2018
47
September, 2023
45
February, 2021
43
April, 2018
40
September, 2020
19
April, 2020
16
January, 2021
10
November, 2020
3
August, 2018
December, 2019
3
February, 2023
3
July, 2019
3
June, 2018
3
May, 2023
1
August, 2022
1
November, 2018
1
September, 2018
Available data
203
tsv
155
fastq
100
bam
100
bigWig
73
zippedFastqFolder
14
txt
8
csv
1
bed bed3+
Organism
453
Homo sapiens
Biosample type
243
primary cell
205
tissue
6
cell line
Organ
95
pancreas
93
heart
76
epithelium
69
kidney
19
lung
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
2
musculature of body
1
liver
Project
237
AMP
133
HPAP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
101
hg19
100
GRCh38
Lab
210
AMP-T2D consortium
133
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
34
audit script error
13
inconsistent ontology term
month_released!
December, 2019
BIOSAMPLE
ASSAY
454 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
snATAC-seq
MeRIP-seq
primary cell
Langerhans cell
85
48
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 15 more…
tissue
kidney
63
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 15 more…
cell line
EndoC_BH1
6
See all biosamples
Download