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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1409
total RNA-seq
1387
ChIP-seq
502
ATAC-seq
366
single cell RNA-seq
210
DNase-seq
85
RNA microarray
84
snATAC-seq
74
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
366
Transcription
84
DNA accessibility
Target of assay
5
control
2
nucleotide modification
Date released
112
August, 2021
56
May, 2022
49
April, 2018
48
July, 2018
47
September, 2023
45
February, 2021
40
September, 2020
19
April, 2020
16
January, 2021
4
November, 2020
3
August, 2018
December, 2019
3
February, 2023
3
July, 2019
3
June, 2018
3
May, 2023
1
August, 2022
1
November, 2018
1
September, 2018
Available data
209
tsv
161
fastq
106
bam
106
bigWig
73
zippedFastqFolder
14
txt
8
csv
1
bed bed3+
Organism
453
Homo sapiens
Biosample type
243
primary cell
211
tissue
cell line
Organ
95
pancreas
93
heart
70
epithelium
69
kidney
19
lung
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
2
musculature of body
1
liver
Project
237
AMP
133
HPAP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
107
hg19
106
GRCh38
Lab
216
AMP-T2D consortium
133
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
34
audit script error
7
inconsistent ontology term
month_released!
December, 2019
biosample_type!
cell line
BIOSAMPLE
ASSAY
454 results
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single cell RNA-seq
snATAC-seq
MeRIP-seq
primary cell
Langerhans cell
85
48
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 15 more…
tissue
kidney
63
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 15 more…
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