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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
592
ChIP-seq
297
ATAC-seq
201
total RNA-seq
199
single cell RNA-seq
85
RNA microarray
78
snATAC-seq
58
WGBS
55
pCHi-C
31
Hi-C
17
RRBS
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
199
Transcription
78
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
98
August, 2021
56
May, 2022
40
February, 2021
40
September, 2020
19
April, 2020
16
January, 2021
10
November, 2020
3
February, 2023
2
December, 2019
1
August, 2022
1
November, 2018
1
September, 2018
Available data
100
tsv
73
zippedFastqFolder
63
fastq
3
csv
1
bed bed3+
1
txt
Organism
286
Homo sapiens
Biosample type
143
primary cell
136
tissue
6
cell line
2
in vitro differentiated cells
Organ
93
heart
kidney
21
pancreas
19
lung
8
blood
8
bodily fluid
6
blood vessel
6
epithelium
6
vasculature
2
artery
2
musculature of body
1
liver
Project
133
HPAP
117
AMP
19
LungMap
18
T1D
Genome assembly (visualization)
107
hg19
GRCh38
Lab
133
Klaus Kaestner, Upenn
107
AMP-T2D consortium
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
31
audit script error
8
inconsistent ontology term
organ_slims!
kidney
assembly!
GRCh38
BIOSAMPLE
ASSAY
287 results
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single cell RNA-seq
snATAC-seq
MeRIP-seq
primary cell
Langerhans cell
85
48
peripheral blood mononuclear cell
8
pancreatic cell
2
tissue
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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