Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
367
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
367
Transcription
1
DNA sequencing
Target of assay
8
control
5
nucleotide modification
Date released
107
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
10
November, 2020
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
209
tsv
134
fastq
106
bam
106
bigWig
52
zippedFastqFolder
13
txt
8
csv
1
vcf
Organism
378
Homo sapiens
Biosample type
187
primary cell
184
tissue
7
cell line
in vitro differentiated cells
Organ
93
heart
90
pancreas
76
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
2
liver
1
musculature of body
Project
237
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
215
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
1
Bing Ren, UCSD
Audit category:
13
inconsistent ontology term
5
audit script error
biosample_type!
in vitro differentiated cells
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
378 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
cell line
EndoC_BH1
6
HepG2
1
See all biosamples
Download