Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
517
ATAC-seq
212
DNase-seq
212
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
69
WGBS
34
Hi-C
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
158
Transcription
1
DNA sequencing
Target of assay
5
control
5
nucleotide modification
Date released
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
10
November, 2020
9
April, 2020
9
August, 2021
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
tsv
128
fastq
100
bam
100
bigWig
52
zippedFastqFolder
13
txt
8
csv
1
vcf
Organism
169
Homo sapiens
Biosample type
87
primary cell
75
tissue
7
cell line
Organ
59
kidney
10
pancreas
9
lung
6
epithelium
2
liver
1
heart
1
musculature of body
Project
85
HPAP
47
KPMP
28
AMP
9
LungMap
Lab
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
6
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
169 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
pancreatic cell
2
tissue
kidney
59
lung
9
islet of Langerhans
4
heart
1
liver
1
+ See 1 more…
cell line
EndoC_BH1
6
HepG2
1
See all biosamples
Download