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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
578
ChIP-seq
295
ATAC-seq
191
total RNA-seq
157
single cell RNA-seq
86
RNA microarray
78
snATAC-seq
58
WGBS
57
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
157
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
10
November, 2020
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
52
zippedFastqFolder
36
fastq
8
csv
7
tsv
5
txt
Organism
167
Homo sapiens
Biosample type
87
primary cell
72
tissue
6
cell line
2
in vitro differentiated cells
Organ
56
kidney
10
pancreas
9
lung
6
epithelium
1
heart
1
liver
1
musculature of body
Project
85
HPAP
47
KPMP
26
AMP
9
LungMap
Genome assembly (visualization)
GRCh38
100
hg19
Lab
85
Klaus Kaestner, Upenn
47
KPMP
13
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
7
audit script error
assembly!
GRCh38
month_released!
August, 2021
BIOSAMPLE
ASSAY
167 results
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single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic cell
2
tissue
kidney
56
lung
9
islet of Langerhans
4
heart
1
liver
1
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cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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