Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
584
ChIP-seq
297
ATAC-seq
247
total RNA-seq
170
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
56
WGBS
54
pCHi-C
29
Hi-C
19
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
170
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
14
August, 2021
10
November, 2020
9
April, 2020
3
December, 2019
3
May, 2023
1
November, 2018
1
September, 2018
Available data
52
zippedFastqFolder
36
fastq
13
tsv
13
txt
8
csv
Organism
180
Homo sapiens
Biosample type
87
primary cell
85
tissue
6
cell line
2
in vitro differentiated cells
Organ
heart
64
kidney
10
pancreas
9
lung
6
blood vessel
6
epithelium
6
vasculature
2
artery
1
liver
1
musculature of body
Project
85
HPAP
47
KPMP
39
AMP
9
LungMap
Genome assembly (visualization)
GRCh38
100
hg19
Lab
85
Klaus Kaestner, Upenn
47
KPMP
18
AMP-T2D consortium
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
7
audit script error
assembly!
GRCh38
organ_slims!
heart
BIOSAMPLE
ASSAY
180 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic cell
2
tissue
kidney
64
lung
9
aorta
4
islet of Langerhans
4
pulmonary artery
2
+ See 2 more…
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download