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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1329
total RNA-seq
460
ATAC-seq
218
single cell RNA-seq
212
DNase-seq
85
RNA microarray
40
pCHi-C
29
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
snATAC-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
218
Transcription
Target of assay
8
control
5
nucleotide modification
Date released
106
August, 2021
49
April, 2018
48
July, 2018
10
November, 2020
3
August, 2018
3
July, 2019
3
June, 2018
May, 2023
1
December, 2019
1
February, 2021
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
204
tsv
106
bam
106
bigWig
100
fastq
8
txt
3
csv
Organism
228
Homo sapiens
Biosample type
120
tissue
102
primary cell
6
cell line
Organ
93
heart
90
pancreas
76
epithelium
9
kidney
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
228
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
210
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
8
Katalin Susztak, Upenn
Audit category:
15
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
month_released!
May, 2023
BIOSAMPLE
ASSAY
228 results
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single cell RNA-seq
MeRIP-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
islet of Langerhans
6
4
+ See 13 more…
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 13 more…
cell line
EndoC_BH1
6
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