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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1736
ChIP-seq
1346
total RNA-seq
414
ATAC-seq
290
single cell RNA-seq
128
DNase-seq
78
snATAC-seq
75
WGBS
48
pCHi-C
28
Hi-C
17
small RNA-seq
16
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
STARR-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
290
Transcription
Target of assay
5
control
2
nucleotide modification
Date released
98
August, 2021
43
April, 2018
42
July, 2018
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
4
November, 2020
3
August, 2018
3
July, 2019
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
191
tsv
121
fastq
93
bam
93
bigWig
52
zippedFastqFolder
3
csv
Organism
294
Homo sapiens
Biosample type
180
primary cell
114
tissue
Organ
93
heart
73
pancreas
69
epithelium
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
200
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
196
AMP-T2D consortium
85
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
2
audit script error
audit.ERROR.category!
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
294 results
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single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 11 more…
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
lung
9
+ See 13 more…
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