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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
345
ATAC-seq
150
total RNA-seq
122
single cell RNA-seq
87
RNA microarray
40
pCHi-C
25
Hi-C
21
RRBS
11
WGBS
10
MeRIP-seq
8
snATAC-seq
5
STARR-seq
4
Capture-C
3
DNase-seq
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
122
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
106
August, 2021
10
November, 2020
6
February, 2021
3
December, 2019
3
May, 2023
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
205
tsv
100
bam
bigWig
94
fastq
13
txt
8
csv
Organism
132
Homo sapiens
Biosample type
122
tissue
6
cell line
2
in vitro differentiated cells
2
primary cell
Organ
93
heart
17
kidney
10
pancreas
6
blood vessel
6
epithelium
6
vasculature
2
artery
1
liver
1
musculature of body
Project
132
AMP
85
HPAP
47
KPMP
9
LungMap
Lab
111
AMP-T2D consortium
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
7
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
132 results
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single cell RNA-seq
MeRIP-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
17
+ See 13 more…
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
primary cell
pancreatic cell
2
See all biosamples
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