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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1169
total RNA-seq
896
ChIP-seq
428
ATAC-seq
233
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
52
pCHi-C
29
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
233
Transcription
Target of assay
8
control
5
nucleotide modification
Date released
106
August, 2021
47
September, 2023
34
May, 2022
18
September, 2020
10
November, 2020
9
April, 2020
6
February, 2021
5
April, 2018
3
July, 2019
3
May, 2023
1
December, 2019
1
February, 2023
Available data
203
tsv
fastq
100
bam
100
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
243
Homo sapiens
Biosample type
178
tissue
59
primary cell
6
cell line
in vitro differentiated cells
Organ
93
heart
64
kidney
15
pancreas
10
epithelium
9
lung
6
blood vessel
6
vasculature
3
brain
2
artery
1
connective tissue
1
liver
1
musculature of body
Project
136
AMP
51
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
115
AMP-T2D consortium
51
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
5
audit script error
biosample_type!
in vitro differentiated cells
files.file_type!
fastq
BIOSAMPLE
ASSAY
243 results
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single cell RNA-seq
MeRIP-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
primary cell
Langerhans cell
51
pancreatic acinar cell
3
cerebellar granule cell
2
Purkinje cell
1
pancreatic ductal cell
1
+ See 1 more…
cell line
EndoC_BH1
6
See all biosamples
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