Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1625
ChIP-seq
874
total RNA-seq
471
ATAC-seq
343
single cell RNA-seq
211
DNase-seq
69
WGBS
57
snATAC-seq
50
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
343
Transcription
Target of assay
8
control
5
nucleotide modification
Date released
106
August, 2021
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
February, 2021
10
November, 2020
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
198
tsv
116
fastq
100
bam
100
bigWig
52
zippedFastqFolder
8
txt
2
csv
Organism
353
Homo sapiens
Biosample type
175
primary cell
172
tissue
6
cell line
in vitro differentiated cells
Organ
93
heart
84
pancreas
76
epithelium
59
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
musculature of body
Project
224
AMP
73
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
203
AMP-T2D consortium
73
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
13
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
February, 2021
BIOSAMPLE
ASSAY
353 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
73
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
cell line
EndoC_BH1
6
See all biosamples
Download