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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1552
ChIP-seq
1285
total RNA-seq
320
ATAC-seq
181
DNase-seq
173
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
173
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
106
August, 2021
47
September, 2023
10
November, 2020
9
April, 2020
6
February, 2021
3
December, 2019
May, 2023
1
February, 2023
1
May, 2022
Available data
105
tsv
13
txt
6
csv
Organism
183
Homo sapiens
Biosample type
primary cell
175
tissue
6
cell line
2
in vitro differentiated cells
Organ
93
heart
61
kidney
10
pancreas
9
lung
6
blood vessel
6
epithelium
6
vasculature
2
artery
1
liver
1
musculature of body
Project
127
AMP
47
KPMP
9
LungMap
Lab
109
AMP-T2D consortium
47
KPMP
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
8
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
primary cell
month_released!
May, 2023
BIOSAMPLE
ASSAY
183 results
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single cell RNA-seq
MeRIP-seq
tissue
kidney
61
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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