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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
0
MeRIP-seq
Assay category
200
DNA accessibility
187
Transcription
Target of assay
3
control
Date released
100
May, 2020
72
May, 2022
48
July, 2018
43
April, 2018
43
September, 2020
15
September, 2018
13
February, 2021
13
May, 2021
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
August, 2018
3
July, 2019
3
June, 2018
2
October, 2019
1
November, 2018
1
November, 2020
Available data
184
bam
178
bigWig
160
fastq
112
tsv
91
zippedFastqFolder
39
bed narrowPeak
22
bigBed narrowPeak
2
csv
1
bed bed3
Organism
387
Homo sapiens
Biosample type
438
tissue
387
primary cell
44
in vitro differentiated cells
35
cell line
Organ
145
pancreas
142
epithelium
6
connective tissue
3
brain
1
liver
Project
253
AMP
134
HPAP
Genome assembly (visualization)
184
hg19
149
GRCh38
Lab
253
AMP-T2D consortium
134
Klaus Kaestner, Upenn
Audit category:
19
inconsistent ontology term
BIOSAMPLE
ASSAY
387 results
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ATAC-seq
single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
35
12
pancreatic beta cell
23
12
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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