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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
867
DNA binding
174
Transcription
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
October, 2019
176
August, 2017
115
May, 2019
106
August, 2021
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
15
October, 2017
10
November, 2018
9
April, 2020
7
December, 2018
7
January, 2019
6
February, 2021
6
September, 2017
4
November, 2020
3
May, 2023
2
March, 2020
1
December, 2019
1
February, 2023
1
May, 2022
Available data
722
bam
575
bigWig
555
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
103
tsv
35
bed broadPeak
28
bed bed3+
13
txt
6
csv
1
tagAlign bed3+
Organism
1038
Homo sapiens
Biosample type
1045
tissue
490
cell line
466
primary cell
200
in vitro differentiated cells
3
stem cell
Organ
209
brain
176
heart
156
liver
121
pancreas
91
kidney
79
blood vessel
79
vasculature
74
connective tissue
73
adipose tissue
66
limb
35
nerve
30
artery
30
musculature of body
20
spleen
9
lung
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
987
AMP
47
KPMP
9
LungMap
2
T1D
Genome assembly (visualization)
550
GRCh38
529
hg19
Lab
974
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
5
audit script error
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
1045 results
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ChIP-seq
single cell RNA-seq
MeRIP-seq
tissue
liver
145
1
kidney
27
64
islet of Langerhans
71
4
heart left ventricle
35
18
subcutaneous abdominal adipose tissue
36
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