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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
178
DNA accessibility
174
Transcription
Target of assay
2
control
2
nucleotide modification
Date released
163
June, 2019
106
August, 2021
47
September, 2023
9
April, 2020
9
November, 2018
6
February, 2021
4
November, 2020
4
October, 2019
3
May, 2023
2
August, 2017
1
December, 2019
1
February, 2023
1
May, 2022
Available data
177
bam
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
176
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
103
tsv
13
txt
10
fastq
6
csv
Organism
356
Homo sapiens
Biosample type
356
tissue
218
primary cell
8
cell line
3
in vitro differentiated cells
Organ
132
kidney
120
heart
36
limb
33
musculature of body
27
brain
18
ureter
11
blood vessel
11
pancreas
11
vasculature
9
lung
6
artery
5
liver
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
300
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
177
GRCh38
161
hg19
Lab
285
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
5
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
356 results
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DNase-seq
single cell RNA-seq
MeRIP-seq
tissue
kidney
13
64
heart left ventricle
3
18
heart
18
1
left cardiac atrium
1
18
heart right ventricle
1
17
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