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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
ATAC-seq
256
single cell RNA-seq
253
ChIP-seq
245
total RNA-seq
85
RNA microarray
57
WGBS
56
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
256
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
10
November, 2020
9
April, 2020
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
198
tsv
128
fastq
bam
100
bigWig
52
zippedFastqFolder
8
txt
3
csv
Organism
266
Homo sapiens
Biosample type
173
tissue
87
primary cell
6
cell line
Organ
93
heart
59
kidney
10
pancreas
9
lung
6
blood vessel
6
epithelium
6
vasculature
2
artery
1
liver
1
musculature of body
Project
125
AMP
85
HPAP
47
KPMP
9
LungMap
Lab
104
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
audit script error
files.file_type!
bam
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
266 results
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single cell RNA-seq
MeRIP-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
primary cell
Langerhans cell
85
pancreatic cell
2
cell line
EndoC_BH1
6
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