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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
ChIP-seq
360
ATAC-seq
261
single cell RNA-seq
246
total RNA-seq
84
snATAC-seq
58
WGBS
48
pCHi-C
24
Hi-C
19
RRBS
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
261
Transcription
Target of assay
2
control
2
nucleotide modification
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
4
November, 2020
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
196
tsv
121
fastq
93
bam
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
265
Homo sapiens
Biosample type
178
tissue
87
primary cell
Organ
93
heart
64
kidney
9
lung
6
blood vessel
6
vasculature
4
pancreas
2
artery
1
liver
1
musculature of body
Project
124
AMP
85
HPAP
47
KPMP
9
LungMap
Lab
109
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
7
audit script error
files.file_type!
bigWig
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
265 results
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single cell RNA-seq
MeRIP-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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primary cell
Langerhans cell
85
pancreatic cell
2
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