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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
113
ATAC-seq
74
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
10
WGBS
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
74
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
37
July, 2018
33
April, 2018
10
November, 2020
3
August, 2018
1
June, 2018
Available data
74
bam
74
bigWig
74
tsv
69
fastq
Organism
84
Homo sapiens
Biosample type
74
primary cell
6
cell line
4
tissue
Organ
93
heart
84
pancreas
76
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
84
AMP
Genome assembly (visualization)
74
GRCh38
74
hg19
Lab
74
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
11
inconsistent ontology term
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
84 results
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single cell RNA-seq
MeRIP-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
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cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
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