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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ATAC-seq
96
total RNA-seq
67
single cell RNA-seq
55
ChIP-seq
26
snATAC-seq
10
MeRIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
67
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
47
September, 2023
10
November, 2020
9
April, 2020
8
August, 2021
3
May, 2023
Available data
8
txt
Organism
77
Homo sapiens
Biosample type
primary cell
71
tissue
6
cell line
Organ
58
kidney
10
pancreas
9
lung
6
epithelium
Project
47
KPMP
21
AMP
9
LungMap
Lab
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
lab.title!
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
77 results
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single cell RNA-seq
MeRIP-seq
tissue
kidney
58
lung
9
islet of Langerhans
4
cell line
EndoC_BH1
6
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