Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1788
ChIP-seq
1459
total RNA-seq
455
ATAC-seq
257
single cell RNA-seq
212
DNase-seq
86
RNA microarray
78
snATAC-seq
75
WGBS
57
pCHi-C
31
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
257
Transcription
Target of assay
8
control
5
nucleotide modification
Date released
August, 2021
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
18
February, 2021
10
November, 2020
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
128
fastq
107
tsv
100
bam
100
bigWig
52
zippedFastqFolder
8
csv
5
txt
Organism
267
Homo sapiens
Biosample type
187
primary cell
72
tissue
6
cell line
2
in vitro differentiated cells
Organ
84
pancreas
76
epithelium
56
kidney
9
lung
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
126
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
113
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
15
inconsistent ontology term
7
audit script error
month_released!
August, 2021
BIOSAMPLE
ASSAY
267 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
56
lung
9
islet of Langerhans
4
heart
1
liver
1
+ See 1 more…
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download