Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1641
ChIP-seq
1371
total RNA-seq
475
ATAC-seq
357
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
357
Transcription
Target of assay
8
control
5
nucleotide modification
Date released
106
August, 2021
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
18
February, 2021
10
November, 2020
9
April, 2020
3
August, 2018
3
July, 2019
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
September, 2018
Available data
200
tsv
124
fastq
97
bam
97
bigWig
52
zippedFastqFolder
13
txt
7
csv
Organism
367
Homo sapiens
Biosample type
183
primary cell
178
tissue
6
cell line
in vitro differentiated cells
Organ
93
heart
83
pancreas
75
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
226
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
205
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
12
inconsistent ontology term
5
audit script error
month_released!
September, 2018
June, 2018
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
367 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
cell line
EndoC_BH1
6
See all biosamples
Download