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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ATAC-seq
293
ChIP-seq
229
total RNA-seq
223
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
223
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
106
August, 2021
47
September, 2023
September, 2020
34
May, 2022
18
February, 2021
10
November, 2020
9
April, 2020
3
December, 2019
3
February, 2023
3
May, 2023
1
November, 2018
1
September, 2018
Available data
205
tsv
106
fastq
bam
100
bigWig
33
zippedFastqFolder
13
txt
8
csv
Organism
235
Homo sapiens
Biosample type
178
tissue
47
primary cell
8
cell line
2
in vitro differentiated cells
Organ
93
heart
64
kidney
10
pancreas
9
lung
6
blood vessel
6
epithelium
6
vasculature
2
artery
1
liver
1
musculature of body
Project
132
AMP
47
KPMP
45
HPAP
9
LungMap
2
T1D
Lab
111
AMP-T2D consortium
47
KPMP
45
Klaus Kaestner, Upenn
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
2
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
7
audit script error
month_released!
September, 2020
files.file_type!
bam
BIOSAMPLE
ASSAY
235 results
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single cell RNA-seq
MeRIP-seq
HiChIP
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
primary cell
Langerhans cell
45
pancreatic cell
2
cell line
EndoC_BH1
6
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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