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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
662
ChIP-seq
299
total RNA-seq
122
ATAC-seq
71
single cell RNA-seq
52
WGBS
24
DNase-seq
11
Hi-C
7
RRBS
6
MeRIP-seq
3
pCHi-C
3
small RNA-seq
2
Capture-C
2
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
71
Transcription
Target of assay
3
control
3
nucleotide modification
Date released
33
April, 2018
33
July, 2018
6
November, 2020
3
August, 2018
1
February, 2021
1
June, 2018
Available data
70
bam
70
bigWig
70
tsv
66
fastq
1
csv
Organism
77
Homo sapiens
Biosample type
70
primary cell
6
cell line
1
tissue
Organ
93
heart
84
pancreas
76
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
77
AMP
Genome assembly (visualization)
70
GRCh38
70
hg19
Lab
71
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
inconsistent ontology term
month_released!
September, 2020
BIOSAMPLE
ASSAY
77 results
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single cell RNA-seq
MeRIP-seq
primary cell
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 3 more…
cell line
EndoC_BH1
6
tissue
liver
1
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