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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
total RNA-seq
84
RNA microarray
57
ChIP-seq
42
ATAC-seq
9
pCHi-C
9
single cell RNA-seq
6
MeRIP-seq
5
Hi-C
4
DNase-seq
2
Capture-C
2
RRBS
1
STARR-seq
Assay category
9
Transcription
Target of assay
3
control
3
nucleotide modification
Date released
6
July, 2018
6
November, 2020
2
December, 2019
1
June, 2018
Available data
9
tsv
7
bam
7
bigWig
7
fastq
Organism
15
Homo sapiens
Biosample type
7
primary cell
6
cell line
2
in vitro differentiated cells
Organ
11
pancreas
7
epithelium
Project
15
AMP
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
9
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
15
inconsistent ontology term
7
audit script error
organ_slims!
brain
BIOSAMPLE
ASSAY
15 results
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single cell RNA-seq
MeRIP-seq
primary cell
co-expressing pancreatic endocrine cell
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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