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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1608
ChIP-seq
1325
total RNA-seq
381
ATAC-seq
206
single cell RNA-seq
163
DNase-seq
86
RNA microarray
84
snATAC-seq
54
pCHi-C
23
Hi-C
20
WGBS
17
small RNA-seq
13
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
206
Transcription
1
DNA methylation
Target of assay
5
control
2
nucleotide modification
Date released
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
16
April, 2018
15
July, 2018
14
August, 2021
9
April, 2020
4
November, 2020
3
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
May, 2021
1
November, 2018
1
September, 2018
Available data
68
fastq
52
zippedFastqFolder
49
tsv
36
bam
36
bigWig
13
txt
8
csv
Organism
211
Homo sapiens
Biosample type
118
primary cell
91
tissue
2
in vitro differentiated cells
Organ
heart
90
pancreas
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
85
HPAP
70
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
85
Klaus Kaestner, Upenn
55
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
7
audit script error
organ_slims!
epithelium
heart
BIOSAMPLE
ASSAY
211 results
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single cell RNA-seq
MeRIP-seq
DNAme array
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
pancreatic stellate cell
4
cerebellar granule cell
2
+ See 7 more…
tissue
kidney
64
islet of Langerhans
6
4
lung
9
aorta
4
pulmonary artery
2
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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