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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
835
ChIP-seq
367
total RNA-seq
180
ATAC-seq
119
single cell RNA-seq
56
snATAC-seq
32
pCHi-C
15
DNase-seq
10
Hi-C
5
GRO-seq
5
STARR-seq
4
RRBS
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
MeRIP-seq
Assay category
119
Transcription
Target of assay
3
control
Date released
40
September, 2020
33
May, 2022
15
July, 2018
12
February, 2021
10
April, 2018
3
July, 2019
2
December, 2019
2
June, 2018
1
November, 2018
1
September, 2018
Available data
62
fastq
52
zippedFastqFolder
32
tsv
30
bam
30
bigWig
2
csv
Organism
119
Homo sapiens
Biosample type
tissue
117
primary cell
2
in vitro differentiated cells
Organ
80
pancreas
epithelium
4
connective tissue
3
brain
Project
85
HPAP
34
AMP
Genome assembly (visualization)
30
GRCh38
30
hg19
Lab
85
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
2
audit script error
organ_slims!
epithelium
biosample_type!
tissue
BIOSAMPLE
ASSAY
119 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
pancreatic stellate cell
4
cerebellar granule cell
2
+ See 6 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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