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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
415
ATAC-seq
193
DNase-seq
120
total RNA-seq
85
RNA microarray
73
single cell RNA-seq
36
snATAC-seq
28
WGBS
26
Hi-C
26
pCHi-C
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
Transcription
Target of assay
2
control
2
nucleotide modification
Date released
47
September, 2023
9
April, 2020
8
August, 2021
4
November, 2020
3
May, 2023
1
December, 2019
1
February, 2021
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
tsv
36
bam
36
bigWig
34
fastq
13
txt
8
csv
Organism
77
Homo sapiens
Biosample type
75
tissue
2
primary cell
Organ
59
kidney
10
pancreas
9
lung
epithelium
1
heart
1
liver
1
musculature of body
Project
HPAP
47
KPMP
21
AMP
9
LungMap
Lab
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
6
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
epithelium
files.file_type!
tsv
award.project!
HPAP
BIOSAMPLE
ASSAY
77 results
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single cell RNA-seq
MeRIP-seq
tissue
kidney
59
lung
9
islet of Langerhans
4
heart
1
liver
1
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primary cell
pancreatic cell
2
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