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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1703
ChIP-seq
1322
total RNA-seq
352
ATAC-seq
193
DNase-seq
177
single cell RNA-seq
85
RNA microarray
78
snATAC-seq
57
pCHi-C
28
WGBS
23
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
177
Transcription
Target of assay
5
control
2
nucleotide modification
Date released
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
April, 2018
15
July, 2018
9
April, 2020
4
November, 2020
3
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
53
fastq
52
zippedFastqFolder
27
tsv
20
bam
20
bigWig
8
csv
5
txt
Organism
181
Homo sapiens
Biosample type
107
primary cell
72
tissue
2
in vitro differentiated cells
Organ
56
kidney
51
pancreas
epithelium
9
lung
3
brain
2
connective tissue
1
heart
1
liver
1
musculature of body
Project
85
HPAP
47
KPMP
40
AMP
9
LungMap
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
85
Klaus Kaestner, Upenn
47
KPMP
33
AMP-T2D consortium
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
7
audit script error
organ_slims!
epithelium
month_released!
April, 2018
August, 2021
BIOSAMPLE
ASSAY
181 results
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single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic cell
6
cerebellar granule cell
2
co-expressing pancreatic endocrine cell
2
mast cell
2
+ See 6 more…
tissue
kidney
56
lung
9
islet of Langerhans
4
heart
1
liver
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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