Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1396
total RNA-seq
428
ATAC-seq
287
single cell RNA-seq
193
DNase-seq
85
RNA microarray
74
snATAC-seq
56
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
287
Transcription
Target of assay
5
control
2
nucleotide modification
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
16
April, 2018
15
July, 2018
4
November, 2020
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
139
tsv
68
fastq
52
zippedFastqFolder
36
bam
36
bigWig
13
txt
8
csv
Organism
291
Homo sapiens
Biosample type
174
tissue
117
primary cell
Organ
93
heart
90
pancreas
epithelium
63
kidney
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
159
AMP
85
HPAP
47
KPMP
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
144
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
5
audit script error
organ_slims!
epithelium
lung
month_released!
December, 2019
BIOSAMPLE
ASSAY
291 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
tissue
kidney
63
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
pancreatic stellate cell
4
cerebellar granule cell
2
+ See 6 more…
See all biosamples
Download