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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
513
ChIP-seq
199
single cell RNA-seq
199
total RNA-seq
195
ATAC-seq
85
RNA microarray
77
snATAC-seq
75
WGBS
51
pCHi-C
17
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
199
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
98
August, 2021
40
September, 2020
34
May, 2022
13
February, 2021
10
November, 2020
9
April, 2020
2
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
100
tsv
52
zippedFastqFolder
36
fastq
3
csv
Organism
209
Homo sapiens
Biosample type
114
tissue
87
primary cell
6
cell line
2
in vitro differentiated cells
Organ
93
heart
kidney
10
pancreas
9
lung
6
blood vessel
6
epithelium
6
vasculature
2
artery
1
liver
1
musculature of body
Project
115
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
100
GRCh38
hg19
Lab
105
AMP-T2D consortium
85
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
2
audit script error
organ_slims!
kidney
assembly!
hg19
BIOSAMPLE
ASSAY
209 results
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single cell RNA-seq
MeRIP-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
lung
9
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
2
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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