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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1621
ChIP-seq
1337
total RNA-seq
414
ATAC-seq
297
single cell RNA-seq
130
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
50
pCHi-C
29
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
297
Transcription
Target of assay
8
control
5
nucleotide modification
Date released
98
August, 2021
48
July, 2018
43
April, 2018
40
September, 2020
34
May, 2022
13
February, 2021
10
November, 2020
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
198
tsv
128
fastq
100
bam
100
bigWig
52
zippedFastqFolder
3
csv
Organism
307
Homo sapiens
Biosample type
187
primary cell
114
tissue
6
cell line
in vitro differentiated cells
Organ
93
heart
84
pancreas
76
epithelium
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
213
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
203
AMP-T2D consortium
85
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
13
inconsistent ontology term
organ_slims!
kidney
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
307 results
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single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
lung
9
+ See 13 more…
cell line
EndoC_BH1
6
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