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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1677
ChIP-seq
1387
total RNA-seq
398
ATAC-seq
201
single cell RNA-seq
123
DNase-seq
84
RNA microarray
78
snATAC-seq
73
WGBS
54
pCHi-C
26
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
201
Transcription
Target of assay
8
control
5
nucleotide modification
Date released
August, 2021
48
July, 2018
43
April, 2018
40
September, 2020
34
May, 2022
13
February, 2021
10
November, 2020
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
2
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
128
fastq
102
tsv
100
bam
100
bigWig
52
zippedFastqFolder
3
csv
Organism
211
Homo sapiens
Biosample type
187
primary cell
16
tissue
6
cell line
2
in vitro differentiated cells
Organ
84
pancreas
76
epithelium
kidney
9
lung
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
117
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
107
AMP-T2D consortium
85
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
15
inconsistent ontology term
2
audit script error
organ_slims!
kidney
blood vessel
month_released!
August, 2021
BIOSAMPLE
ASSAY
211 results
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single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
lung
9
islet of Langerhans
4
heart
1
liver
1
skeletal muscle tissue
1
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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