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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1285
ChIP-seq
1271
total RNA-seq
320
ATAC-seq
181
DNase-seq
126
single cell RNA-seq
87
RNA microarray
39
pCHi-C
28
WGBS
24
Hi-C
16
small RNA-seq
11
RRBS
8
snATAC-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
126
Transcription
Target of assay
control
5
nucleotide modification
Date released
106
August, 2021
6
April, 2018
6
February, 2021
5
November, 2020
3
December, 2019
3
May, 2023
1
February, 2023
1
May, 2022
Available data
111
tsv
13
txt
6
bam
6
bigWig
6
csv
6
fastq
Organism
131
Homo sapiens
Biosample type
126
tissue
primary cell
3
cell line
2
in vitro differentiated cells
Organ
93
heart
17
kidney
11
pancreas
6
blood vessel
6
vasculature
3
epithelium
2
artery
1
liver
1
musculature of body
Project
131
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
115
AMP-T2D consortium
11
Katalin Susztak, Upenn
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
audit script error
5
inconsistent ontology term
target.investigated_as!
control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
131 results
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single cell RNA-seq
MeRIP-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
17
+ See 13 more…
cell line
EndoC_BH1
3
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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