Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1461
total RNA-seq
1422
ChIP-seq
484
ATAC-seq
267
single cell RNA-seq
182
DNase-seq
87
RNA microarray
84
snATAC-seq
67
WGBS
54
pCHi-C
31
Hi-C
19
RRBS
17
small RNA-seq
5
FAIRE-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
267
Transcription
Target of assay
control
5
nucleotide modification
Date released
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
18
February, 2021
14
August, 2021
9
April, 2020
5
November, 2020
3
August, 2018
3
December, 2019
3
June, 2018
3
May, 2023
1
November, 2018
1
September, 2018
Available data
128
fastq
110
tsv
97
bam
97
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
272
Homo sapiens
Biosample type
184
primary cell
83
tissue
3
cell line
2
in vitro differentiated cells
Organ
heart
79
pancreas
73
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
2
artery
1
liver
1
musculature of body
Project
131
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
115
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
12
inconsistent ontology term
7
audit script error
target.investigated_as!
control
organ_slims!
heart
BIOSAMPLE
ASSAY
272 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 12 more…
tissue
kidney
64
lung
9
aorta
4
islet of Langerhans
2
pulmonary artery
2
+ See 2 more…
cell line
EndoC_BH1
3
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download