Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1533
total RNA-seq
1070
ChIP-seq
504
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
84
February, 2021
2
December, 2019
2
October, 2019
1
August, 2017
1
August, 2021
Available data
209
bam
209
bed narrowPeak
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
84
txt
12
fastq
2
tsv
Organism
89
Homo sapiens
Biosample type
88
tissue
2
primary cell
Organ
84
bone element
4
kidney
3
epithelium
1
adipose tissue
1
connective tissue
1
liver
Project
90
AMP
Lab
90
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
assay_title!
CRISPR RNA-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
90 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
DNase-seq
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
right lobe of liver
1
subcutaneous adipose tissue
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
Download