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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1484
total RNA-seq
456
ATAC-seq
352
single cell RNA-seq
212
DNase-seq
87
RNA microarray
78
snATAC-seq
75
WGBS
57
pCHi-C
33
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
456
DNA accessibility
Date released
106
February, 2021
103
February, 2023
100
May, 2020
77
May, 2022
34
May, 2021
26
November, 2019
22
October, 2019
14
September, 2018
13
August, 2021
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
December, 2019
1
November, 2020
Available data
214
bed narrowPeak
175
bam
136
bigWig
87
txt
61
fastq
39
zippedFastqFolder
27
bigBed narrowPeak
16
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
2
bed broadPeak
Organism
542
Homo sapiens
Biosample type
272
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
152
pancreas
104
epithelium
96
bone element
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
26
connective tissue
23
liver
12
skeleton
8
limb
7
adipose tissue
4
brain
2
kidney
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
483
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
261
hg19
159
GRCh38
Lab
430
AMP-T2D consortium
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
126
inconsistent ontology term
2
audit script error
1
inconsistent replicate
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
543 results
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Clear Filters
ATAC-seq
RNA microarray
tissue
bone element
84
islet of Langerhans
68
coronary artery
36
liver
20
retina
15
+ See 31 more…
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 34 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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