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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
Date released
84
February, 2021
18
July, 2019
5
January, 2018
3
February, 2023
2
December, 2019
1
August, 2021
Available data
84
txt
23
bigWig
20
tsv
18
bam
5
fastq
Organism
112
Homo sapiens
Biosample type
103
tissue
4
in vitro differentiated cells
3
cell line
2
primary cell
1
stem cell
Organ
84
bone element
4
adipose tissue
4
brain
4
connective tissue
3
kidney
3
liver
2
musculature of body
2
pancreas
1
embryo
1
epithelium
1
heart
Project
110
AMP
3
T1D
Genome assembly (visualization)
18
GRCh38
18
hg19
5
hg18
Lab
110
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
113 results
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RNA microarray
small RNA-seq
GRO-seq
CRISPR genome editing followed by DNA sequencing
tissue
bone element
84
body of pancreas
2
right lobe of liver
2
subcutaneous adipose tissue
1
1
cerebellum (Hemisphere)
1
+ See 12 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
cell line
EndoC_BH1
3
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
stem cell
hESC
1
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