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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
87
February, 2021
5
August, 2021
2
December, 2019
Available data
84
txt
5
tsv
2
bed bed3+
Organism
93
Homo sapiens
Biosample type
90
tissue
2
cell line
2
in vitro differentiated cells
Organ
84
bone element
5
kidney
3
connective tissue
3
epithelium
2
pancreas
1
adipose tissue
Project
94
AMP
Genome assembly (visualization)
2
hg19
Lab
92
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
86
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
94 results
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RNA microarray
Capture-C
snDrop-seq
tissue
bone element
84
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 2 more…
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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