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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1678
ChIP-seq
1059
total RNA-seq
506
ATAC-seq
359
single cell RNA-seq
203
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
52
pCHi-C
33
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
203
DNA accessibility
Date released
181
June, 2019
84
February, 2021
10
October, 2019
8
November, 2018
4
August, 2017
2
December, 2019
Available data
200
bam
200
bed narrowPeak
200
bigBed narrowPeak
200
bigWig
197
bed broadPeak
197
bigBed broadPeak
196
bed bed3+
84
txt
10
fastq
2
tsv
Organism
289
Homo sapiens
Biosample type
262
tissue
25
primary cell
2
cell line
Organ
84
bone element
83
kidney
36
limb
33
musculature of body
32
brain
30
heart
20
epithelium
18
ureter
11
vasculature
connective tissue
9
blood vessel
8
pancreas
6
liver
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
289
AMP
Genome assembly (visualization)
198
GRCh38
178
hg19
Lab
289
AMP-T2D consortium
Audit category:
87
inconsistent ontology term
2
audit script error
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
289 results
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Clear Filters
DNase-seq
RNA microarray
tissue
bone element
84
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
primary cell
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 14 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
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