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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
34
DNA accessibility
10
DNA methylation
Date released
24
June, 2019
9
July, 2019
6
October, 2019
4
August, 2017
1
November, 2020
Available data
32
bam
32
bed narrowPeak
32
bigBed narrowPeak
32
bigWig
30
bed broadPeak
30
bigBed broadPeak
28
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
3
fastq
Organism
44
Homo sapiens
Biosample type
tissue
41
primary cell
2
cell line
1
in vitro differentiated cells
Organ
25
epithelium
16
kidney
8
connective tissue
7
vasculature
6
brain
4
blood vessel
4
heart
3
liver
2
eye
2
musculature of body
2
vein
1
pancreas
Project
44
AMP
Genome assembly (visualization)
35
hg19
30
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
snATAC-seq
biosample_type!
tissue
BIOSAMPLE
ASSAY
44 results
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DNase-seq
RRBS
primary cell
cardiac fibroblast
3
1
kidney tubule cell
3
skeletal muscle myoblast
2
1
cardiac muscle cell
1
1
choroid plexus epithelial cell
1
1
+ See 18 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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