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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
237
total RNA-seq
134
single cell RNA-seq
61
ATAC-seq
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
61
DNA accessibility
4
DNA methylation
Date released
18
May, 2022
14
September, 2018
9
August, 2017
8
October, 2017
7
August, 2020
5
September, 2017
3
September, 2020
1
March, 2019
Available data
278
bed narrowPeak
175
bam
136
bigWig
65
fastq
64
xls
39
zippedFastqFolder
27
bigBed narrowPeak
19
bed bedMethyl
19
bigBed bedMethyl
14
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
3
txt
2
bed broadPeak
Organism
65
Homo sapiens
Biosample type
33
primary cell
32
tissue
Organ
56
pancreas
32
epithelium
2
adipose tissue
2
connective tissue
2
liver
2
musculature of body
1
brain
1
spleen
Project
55
AMP
10
HPAP
Genome assembly (visualization)
53
hg19
42
GRCh38
Lab
35
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
65 results
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ATAC-seq
RRBS
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
skeletal muscle myoblast
1
tissue
islet of Langerhans
20
body of pancreas
4
skeletal muscle tissue
2
cerebellum (Hemisphere)
1
liver
1
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