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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1396
total RNA-seq
428
ATAC-seq
299
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
84
February, 2021
9
July, 2019
6
August, 2017
4
November, 2020
1
August, 2021
1
December, 2019
Available data
84
txt
13
bed bedMethyl
13
bigBed bedMethyl
4
fastq
1
tsv
Organism
104
Homo sapiens
Biosample type
101
tissue
4
primary cell
Organ
84
bone element
epithelium
12
pancreas
6
kidney
5
musculature of body
2
brain
2
connective tissue
2
heart
2
liver
1
adipose tissue
1
eye
1
pericardium
1
vasculature
Project
105
AMP
Genome assembly (visualization)
13
hg19
Lab
101
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
85
inconsistent ontology term
1
audit script error
organ_slims!
epithelium
BIOSAMPLE
ASSAY
105 results
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RNA microarray
RRBS
MeRIP-seq
tissue
bone element
84
islet of Langerhans
1
4
skeletal muscle tissue
4
brain
1
heart left ventricle
1
+ See 6 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
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