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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
974
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
Date released
41
May, 2022
27
July, 2019
7
August, 2017
Available data
41
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
fastq
18
bam
17
bigWig
6
tsv
Organism
75
Homo sapiens
Biosample type
50
primary cell
25
tissue
Organ
47
epithelium
43
pancreas
10
heart
4
connective tissue
4
kidney
4
liver
4
musculature of body
3
adipose tissue
3
vasculature
2
blood vessel
2
brain
1
eye
1
limb
1
pericardium
Project
41
HPAP
34
AMP
Genome assembly (visualization)
15
hg19
8
GRCh38
Lab
41
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
75 results
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WGBS
RRBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
tissue
heart left ventricle
4
1
subcutaneous abdominal adipose tissue
3
aorta
2
heart right ventricle
2
liver
2
+ See 10 more…
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